fioreDB : Database for Crop and Flower Bio-engineering by CRES-T system

fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G11440 (AtMYB65)

Alias

AtMYB65

TF Classification

FioreDB	MYB (Click to show phylogenetic tree)
RARTF	MYB superfamily / ATR1
AtTFDB	MYB / R2R3-MYBs
PlnTFDB	MYB (v3.0), MYB (v1.0)
DATF	MYB

TAIR short description

myb domain protein 65 (.1)

TAIR annotation

Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures. (.1)

Gene model

Gene model	cDNA support
AT3G11440.1	15

Entry clone (w/o stop)

RE_1391_x

External link

General info	TAIR DATA
Genomic seq	TAIR seq viewer
SNP	SALK SNP Viewer
T-DNA tag line	T-DNA Express
miRNA	Search ASRP
Phylogeny	SALAD database
Promoter	ppdb

Microarray data
FioreDB
ATTED-II	ATTED-II data
NCBI GEO	NCBI GEO profile
NASC	NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator	Genevestigator
eFP Browser	Developmental Map Abiotic Stress
AtGenExpress	Development Hormone Abiotic Stress Light Pathogen

Gene Ontology (GO)

(F) 1135: other molecular functions	->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 1990019: cell organization and biogenesis	->protein storage vacuole organization
(F) 3677: DNA or RNA binding	->DNA binding
(F) 3700: transcription factor activity	->transcription factor activity, sequence-specific DNA binding
(P) 43068: other cellular processes	->positive regulation of programmed cell death
(F) 43565: DNA or RNA binding	->sequence-specific DNA binding
(F) 44212: nucleic acid binding	->transcription regulatory region DNA binding
(P) 45893: transcription,DNA-dependent	->positive regulation of transcription, DNA-templated
(P) 45926: other biological processes	->negative regulation of growth
(P) 48235: other cellular processes	->pollen sperm cell differentiation
(P) 48653: developmental processes	->anther development
(P) 48655: developmental processes	->anther wall tapetum morphogenesis
(C) 5634: nucleus	->nucleus
(P) 6351: transcription,DNA-dependent	->transcription, DNA-templated
(P) 6355: other metabolic processes	->regulation of transcription, DNA-templated
(P) 6357: other metabolic processes	->regulation of transcription from RNA polymerase II promoter
(P) 8285: other cellular processes	->negative regulation of cell proliferation
(P) 9723: other biological processes	->response to ethylene
(P) 9740: signal transduction	->gibberellic acid mediated signaling pathway
(P) 9751: other biological processes	->response to salicylic acid
(F) 981: transcription factor activity	->RNA polymerase II transcription factor activity, sequence-specific DNA binding

miRNA/tasiRNA

Target sequence

miRNA/tasiRNA sequence

Map

5'--3'

miR159a: 3'-ATCTCGAGGGAAGTTAGGTTT-5'

5'--3'

miR319a: 3'-TCCCTCGAGGGAAGTCAGGTT-5'

5'--3'

miR319b: 3'-TCCCTCGAGGGAAGTCAGGTT-5'

5'--3'

miR319c: 3'-TCCTCGAGGGAAGTCAGGTTT-5'

5'--3'

miR858: 3'-TTCCAGCTTGTCTGTTGCTTT-5'

Orthologs

	Type
	Ia	Ib	II	III	Total
poplar
soybean
rice
sorghum
physcomitrella
Total					0E0

Repression motif

Repression motif
in putative orthologs

Status

Plasmid construction	-> done
Plasmid construction	-> done
Transformed	-> done
T1 seed harvested	-> done
T2 seed harvested	-> done

CRES-T phenotype from individual project

CRES-T phenotype from publication

CRES-T phenotype from bulk project

Phenotype in ornamental plants

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