fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G18990 (REM39, VRN1)

Alias REM39, VRN1
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFABI3/VP1 / ABSCISIC ACID-INSENSITIVE3
AtTFDBABI3VP1
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
TAIR annotation Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3 (.1)
Gene model
Gene model cDNA support
AT3G18990.1 71
Entry clone (w/o stop) RE_0799
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10048: response to abiotic or biotic stimulus ->vernalization response
(F) 3677: DNA or RNA binding ->DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5654: other intracellular components ->nucleoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9909: developmental processes ->regulation of flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 5 6
rice
sorghum
physcomitrella
Total 2 6 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> no transformant(2011.10.24AKITA)

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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