fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G20910 (NF-YA9)

Alias NF-YA9
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / HAP2 type
AtTFDBCCAAT-HAP2
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-HAP2
TAIR short description "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1)
TAIR annotation "nuclear factor Y, subunit A9" (NF-YA9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A1 (TAIR:AT5G12840.4); Has 696 Blast hits to 696 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 142; Plants - 380; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G20910.1 33
Entry clone (w/o stop) RE_0828
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10262: developmental processes ->somatic embryogenesis
(C) 16602: nucleus ->CCAAT-binding factor complex
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 48316: developmental processes ->seed development
(P) 55046: developmental processes ->microgametogenesis
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9555: developmental processes ->pollen development
(P) 9790: developmental processes ->embryo development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR169a: 3'-AGCCGTTCAGTAGGAACCGAC-5'
5'--3'

miR169b: 3'-AGGCCGTTCAGTAGGAACCGA-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice 1 1
sorghum
physcomitrella
Total 1 1
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment