fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G22170 (FHY3)

Alias FHY3
TF Classification
FioreDBFAR1_related (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFAR1 (v3.0)
DATF
TAIR short description far-red elongated hypocotyls 3 (.1.2)
TAIR annotation A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. (.1), A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. (.2)
Gene model
Gene model cDNA support
AT3G22170.2 46
AT3G22170.1 44
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10017: response to abiotic or biotic stimulus ->red or far-red light signaling pathway
(P) 10018: signal transduction ->far-red light signaling pathway
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes ->positive regulation of circadian rhythm
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(P) 9585: response to abiotic or biotic stimulus ->red, far-red light phototransduction
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 3 5
soybean 1 2 2 5
rice
sorghum
physcomitrella
Total 2 3 5 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MIDDMIDLQDNVPADDVV at 14/840 in poplar Pt005406 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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