fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G25710 (TMO5, BHLH32, bHLH032, ATAIG1)

Alias TMO5, BHLH32, bHLH032, ATAIG1
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1)
TAIR annotation Encodes a basic helixloophelix transcription factor that is expressed in the hypophysis-adjacent embryo cells, and is required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation and Pi content. (.1)
Gene model
Gene model cDNA support
AT3G25710.1 32
Entry clone (w/o stop) RE_0247
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 16036: response to stress ->cellular response to phosphate starvation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48364: developmental processes ->root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 80147: other cellular processes ->root hair cell development
(P) 9718: other metabolic processes ->anthocyanin-containing compound biosynthetic process
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean
rice
sorghum
physcomitrella
Total 1 1 2
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        wavy leaf, asymmetric leaf, stem fusion

         fused stem (direct input), 
         rough surface leaf (direct input), 
         asynmetric cotyledon (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         abnormal leaf 
         (A20265-148)
         

         
         

         slow growth 
         (A20584-86)
         

         slow growth, 
         too large leaf 
         (A20585-128)
         


        		
       

       

        Phenotype in ornamental plants


        
         

          Comment