fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT3G44785
Alias
TF Classification
FioreDB
C3HZnF
(Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDB
C3H
(v3.0), C3H (v1.0)
DATF
TAIR short description
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
TAIR annotation
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putative (TAIR:AT1G27650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT3G44785.1
0
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding
->nucleic acid binding
(F) 46872: other binding
->metal ion binding
(C) 5634: nucleus
->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
5
6
soybean
1
6
7
rice
1
3
4
sorghum
1
2
3
physcomitrella
1
3
4
Total
5
19
24
Repression motif
Repression motif
in putative orthologs
SPGFK
LLLFR
FLLFS at 95/876 in sorghum
Sb023474
(Type II)
Status
Plasmid construction
-> not_yet
Plasmid construction
-> not_yet
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment