fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G52250

Alias
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1
AtTFDB
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description Duplicated homeodomain-like superfamily protein (.1)
TAIR annotation Encodes a protein with a putative role in mRNA splicing. (.1)
Gene model
Gene model cDNA support
AT3G52250.1 20
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10582: developmental processes ->floral meristem determinacy
(P) 122: other cellular processes ->negative regulation of transcription from RNA polymerase II promoter
(P) 1900055: developmental processes ->regulation of leaf senescence
(P) 1990619: other cellular processes ->histone H3-K9 deacetylation
(P) 2000617: protein metabolism ->positive regulation of histone H3-K9 acetylation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 8380: other cellular processes ->RNA splicing
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice
sorghum 1 1
physcomitrella 1 1
Total 4 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EVKKLLDLRQQQPTSNYL at 870/1799 in sorghum Sb032118 (Type Ib)
SKARKSLGLDLIHQGA at 1070/1799 in sorghum Sb032118 (Type Ib)
SKARKCLGLDLMHPGH at 1058/1716 in poplar Pt043296 (Type Ib)
RPSCSELSLTLVPVRL at 607/2204 in physcomitrella Pp016247 (Type Ib)
SKGRKCLGLDLMRPIP at 916/1433 in soybean Gm028384 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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