Alias |
ATSZF1 |
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | C3H-type 1(Zn) / putative zinc finger protein |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
salt-inducible zinc finger 1 (.1) |
TAIR annotation |
salt-inducible zinc finger 1 (SZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G40140.2); Has 1623 Blast hits to 1414 proteins in 181 species: Archae - 2; Bacteria - 49; Metazoa - 777; Fungi - 32; Plants - 465; Viruses - 2; Other Eukaryotes - 296 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0455_x |
External link |
|
Gene Ontology (GO) |
(P) 10200: other biological processes |
->response to chitin |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5634: nucleus |
->nucleus |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
4 |
5 |
soybean |
|
|
1 |
5 |
6 |
rice |
|
|
|
|
|
sorghum |
|
|
|
|
|
physcomitrella |
|
|
|
|
|
Total |
|
|
2 |
9 |
11 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
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Comment |
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