fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G57920 (SPL15, MSC1)

Alias SPL15, MSC1
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter binding protein-like 15 (.1)
TAIR annotation Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. (.1)
Gene model
Gene model cDNA support
AT3G57920.1 9
Entry clone (w/o stop) RE_0970_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42127: other cellular processes ->regulation of cell proliferation
(F) 46872: other binding ->metal ion binding
(P) 48653: developmental processes ->anther development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 8361: cell organization and biogenesis ->regulation of cell size
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156a: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156b: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156c: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156d: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156e: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156f: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157a: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157b: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157c: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        short hypocotyl in the dark

         abnormal seedling (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         dwarf, 
         bushy 
         (A20871-253)
         

         dwarf, 
         narrow leaf, 
         bushy 
         (A20858-120)
         

         dwarf, 
         bushy 
         (A20871-233)
         

         abnormal flowering or growth, 
         bushy 
         (A20879-259)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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