Alias |
ATHAM2, LOM2 |
TF Classification |
FioreDB | GRAS (Click to show phylogenetic tree) |
RARTF | GRAS / SCARECROW |
AtTFDB | GRAS |
PlnTFDB | GRAS (v3.0), GRAS (v1.0) |
DATF | GRAS |
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TAIR short description |
LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) |
TAIR annotation |
HAIRY MERISTEM 2 (HAM2); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2330 Blast hits to 2284 proteins in 297 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 2323; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
RE_0901 |
External link |
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Gene Ontology (GO) |
(P) 30154: other cellular processes |
->cell differentiation |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
(P) 48768: cell organization and biogenesis |
->root hair cell tip growth |
(P) 51301: other cellular processes |
->cell division |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
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miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
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miR170: 3'-CTATAACTGTGCCGAGTTAGT-5' |
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5'--3'
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miR171a: 3'-CTATAACCGCGCCGAGTTAGT-5' |
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5'--3'
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miR171b: 3'-GCACTATAACCGTGCCGAGTT-5' |
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5'--3'
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miR171c: 3'-GCACTATAACCGTGCCGAGTT-5' |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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rice |
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sorghum |
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physcomitrella |
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Total |
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0E0 |
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Repression motif |
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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