fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G60630 (ATHAM2, LOM2)

Alias ATHAM2, LOM2
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SCARECROW
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1)
TAIR annotation HAIRY MERISTEM 2 (HAM2); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2330 Blast hits to 2284 proteins in 297 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 2323; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G60630.1 39
Entry clone (w/o stop) RE_0901
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48768: cell organization and biogenesis ->root hair cell tip growth
(P) 51301: other cellular processes ->cell division
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR170: 3'-CTATAACTGTGCCGAGTTAGT-5'
5'--3'

miR171a: 3'-CTATAACCGCGCCGAGTTAGT-5'
5'--3'

miR171b: 3'-GCACTATAACCGTGCCGAGTT-5'
5'--3'

miR171c: 3'-GCACTATAACCGTGCCGAGTT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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