fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G61890 (ATHB12, ATHB-12)

Alias ATHB12, ATHB-12
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / GLABRA2
AtTFDBHomeobox / HD-Zip I
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1)
TAIR annotation Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. (.1)
Gene model
Gene model cDNA support
AT3G61890.1 40
Entry clone (w/o stop) RE_01H04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6970: response to stress ->response to osmotic stress
(P) 7275: developmental processes ->multicellular organism development
(P) 9414: response to stress ->response to water deprivation
(P) 9615: response to abiotic or biotic stimulus ->response to virus
(P) 9651: response to stress ->response to salt stress
(P) 9737: other biological processes ->response to abscisic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella
Total 1 2 1 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        rosette‘å‚«‚¢(18/71), ”w‚‚¢(32/71), (phenotype_A20015:leaf_ƒƒ[ƒbƒg‘åE—t”‘½‚¢/stem_”w‚)

         over-accumulated anthocyanin (A20480, A20469), 
         too large leaf (A20015), 
         tall height (direct input, A20015), 
         too many rosettes (A20015)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         long petiole, 
         early flowering 
         (A20269-98)
         

         
         

         dwarf 
         (A20217-52)
         

         sterile or low fertility 
         (A20590-37)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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