fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G62240

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDB
DATFC2H2
TAIR short description RING/U-box superfamily protein (.1)
TAIR annotation RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc ion binding;nucleic acid binding (TAIR:AT2G47090.1); Has 3461 Blast hits to 1592 proteins in 298 species: Archae - 0; Bacteria - 234; Metazoa - 759; Fungi - 420; Plants - 151; Viruses - 4; Other Eukaryotes - 1893 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G62240.1 39
Entry clone (w/o stop) RE_1231
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3729: DNA or RNA binding ->mRNA binding
(C) 5634: nucleus ->nucleus
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 1
rice 1 1 2
sorghum 1 1
physcomitrella
Total 4 3 7
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
SMAALLDLQSSDPDPHNT at 772/812 in poplar Pt017815 (Type Ia)
SMAALLDLQNSEPDPRET at 776/819 in poplar Pt039819 (Type II)
RGSNRQLDLHLIWTVQ at 757/998 in sorghum Sb022119 (Type Ia)
DGSKESLQLHLDVEMG at 845/998 in sorghum Sb022119 (Type Ia)
NSLKESLQLHLDVSIY at 877/998 in sorghum Sb022119 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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