fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT4G00150 (ATHAM3, SCL6, LOM3)
Alias
ATHAM3, SCL6, LOM3
TF Classification
FioreDB
GRAS
(Click to show phylogenetic tree)
RARTF
GRAS
/ SCARECROW
AtTFDB
GRAS
PlnTFDB
GRAS
(v3.0), GRAS (v1.0)
DATF
GRAS
TAIR short description
LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1)
TAIR annotation
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT4G00150.1
46
Entry clone (w/o stop)
RE_0902_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes
->cell differentiation
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding
->sequence-specific DNA binding
(P) 48768: other cellular processes
->root hair cell tip growth
(P) 51301: other cellular processes
->cell division
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
(P) 7623: other biological processes
->circadian rhythm
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR170: 3'-CTATAACTGTGCCGAGTTAGT-5'
5'--3'
miR171a: 3'-CTATAACCGCGCCGAGTTAGT-5'
5'--3'
miR171b: 3'-GCACTATAACCGTGCCGAGTT-5'
5'--3'
miR171c: 3'-GCACTATAACCGTGCCGAGTT-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
3
4
soybean
1
1
2
rice
1
1
sorghum
1
1
physcomitrella
Total
2
2
4
8
Repression motif
Repression motif
in putative orthologs
PSSHD
ELELEL
GFTQE at 390/602 in poplar
Pt037878
(Type Ia)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment