fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G15090 (FAR1)

Alias FAR1
TF Classification
FioreDBFAR1_related (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFAR1 (v3.0)
DATF
TAIR short description FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
TAIR annotation Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. (.1)
Gene model
Gene model cDNA support
AT4G15090.1 12
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10017: signal transduction ->red or far-red light signaling pathway
(P) 10018: other cellular processes ->far-red light signaling pathway
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(F) 102965: other enzyme activity ->alcohol-forming fatty acyl-CoA reductase activity
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes ->positive regulation of circadian rhythm
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(P) 55114: other metabolic processes ->oxidation-reduction process
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6629: other metabolic processes ->lipid metabolic process
(F) 80019: other enzyme activity ->fatty-acyl-CoA reductase (alcohol-forming) activity
(F) 8270: other binding ->zinc ion binding
(P) 9585: other cellular processes ->red, far-red light phototransduction
(P) 9639: response to abiotic or biotic stimulus ->response to red or far red light
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3 6
soybean 1 1 3 5
rice
sorghum
physcomitrella
Total 2 3 6 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MIDDMIDLQDNVPADDVV at 14/840 in poplar Pt005406 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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