fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G16150

Alias
TF Classification
FioreDBCAMTA (Click to show phylogenetic tree)
RARTF
AtTFDBCAMTA
PlnTFDBCAMTA (v3.0), CAMTA (v1.0)
DATFCAMTA
TAIR short description calmodulin binding;transcription regulators (.1)
TAIR annotation calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT3G16940.1); Has 3526 Blast hits to 2387 proteins in 249 species: Archae - 2; Bacteria - 65; Metazoa - 2447; Fungi - 177; Plants - 543; Viruses - 8; Other Eukaryotes - 284 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G16150.1 42
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 70417: other cellular processes ->cellular response to cold
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR847: 3'-GTAGTTCTTCTTCTCCTCACT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 1 3
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 3 1 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
SPGLVNLCLSLDGSKP at 341/824 in poplar Pt042893 (Type III)
THNQAKLELELEEFLD at 910/929 in soybean Gm042190 (Type Ia)
SPGLVNLCLSLDGSKP at 370/845 in poplar Pt042892 (Type II)
SPGLVNLCLSLDGLEP at 440/915 in poplar Pt034386 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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