fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G17460 (HAT1)

Alias HAT1
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1)
TAIR annotation Encodes homeobox protein HAT1. (.1)
Gene model
Gene model cDNA support
AT4G17460.1 62
Entry clone (w/o stop) RE_0560
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10582: developmental processes ->floral meristem determinacy
(P) 3006: other biological processes ->developmental process involved in reproduction
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 43621: protein binding ->protein self-association
(P) 48467: developmental processes ->gynoecium development
(P) 48507: other biological processes ->meristem development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 80127: developmental processes ->fruit septum development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 4 5
rice
sorghum
physcomitrella
Total 2 8 10
Repression motif 
MMGKEDLGLSLSLGFA at 6/282 in AT4G17460.1
Repression motif
in putative orthologs		 
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type II)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type II)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type III)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type II)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type II)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		—cA•¨ŠúFŽq—tE–{—t¬‚³‚¢(26/138), ª—Ή»(9/138), –{—tF×’·‚¢(22/70), Œ`‚¢‚Ñ‚Â(18/70), —t•¿—Z‡(4/70), ‰ÔF‚â‚⏬‚³‚­‚ÄŒ`‚®‚µ‚á‚®‚µ‚á(5/70), ‚â‚â‘å‚«‚¢(10/70), ‚³‚âF‰ºŒü‚«(13/70), ‰ÔŒsF‘ç‚«(5/70), ‚³‚â‚ÌŠÔŠu‚Ü‚¿‚Ü‚¿(19/70), ’¸‰Ô—Z‡(11/70), A•¨‘́F‹É¬‚¾‚ªA—t‚ª×’·‚­‰Ô‚ ‚è(3/70), (phenotype_A20116:leaf_‚Ö‚çŒ`/flower_‘å‚«‚¢/silique_•s–«/stem_”w‚/’¸‰Ô—Z‡/‚³‚≺Œü‚«/‘ç‚«/‚³‚âŠÔŠu‚Ü‚¿‚Ü‚¿)(phenotype_A20130:leaf_‚Ö‚çŒ`/flower_¬‚³‚­‚Ä‚®‚µ‚á‚®‚µ‚á/silique_•s–«/’¸‰Ô—Z‡/‚³‚≺Œü‚«/ƒƒ[ƒbƒg¬)
abnormal silique (A20116), early flowering (A20116), narrow leaf (direct input), abnormal flower (A20116, A20130), sterile or low fertility (A20130, A20116), tall height (A20116), abnormal shaped leaf (A20116, A20130)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project dark green leaf, narrow leaf (A20942-66)
abnormal flower (A20941-32)
Phenotype in ornamental plants
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