Alias |
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TF Classification |
FioreDB | AT-hook (Click to show phylogenetic tree) |
RARTF | AT-hook |
AtTFDB | |
PlnTFDB | |
DATF | |
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TAIR short description |
AT hook motif DNA-binding family protein (.1) |
TAIR annotation |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT5G51590.1); Has 750 Blast hits to 746 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 748; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
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External link |
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Gene Ontology (GO) |
(P) 10051: developmental processes |
->xylem and phloem pattern formation |
(P) 10089: other biological processes |
->xylem development |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 43621: protein binding |
->protein self-association |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
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miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
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miR838: 3'-ACACGTTCTTCATCTTCTTTT-5' |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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rice |
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sorghum |
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physcomitrella |
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Total |
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0E0 |
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Repression motif |
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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