fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G30080 (ARF16)

Alias ARF16
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBABI3VP1, ARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description auxin response factor 16 (.1)
TAIR annotation Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. (.1)
Gene model
Gene model cDNA support
AT4G30080.1 23
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 35198: DNA or RNA binding ->miRNA binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48829: developmental processes ->root cap development
(P) 51301: other cellular processes ->cell division
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7389: developmental processes ->pattern specification process
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR160a: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160b: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160c: 3'-ACCGTATGTCCCTCGGTCCGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 3 7
soybean 5 3 8
rice 1 2 3
sorghum 1 2 3
physcomitrella 1 1
Total 3 1 12 6 22
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
DHQLNKLHLGLLHSGS at 473/698 in rice Os036356 (Type II)
EDVGRTLDLQLLESYE at 634/700 in poplar Pt043428 (Type II)
EDVGRTLDLSLLGSYE at 634/705 in poplar Pt006126 (Type II)
QLGFPLDLQFQLPSFSGN at 408/690 in poplar Pt021330 (Type III)
HAHTTIDLRVPPFILCN at 45/697 in soybean Gm031273 (Type III)
EDVGRTLDLSLFGSYE at 604/701 in soybean Gm033075 (Type III)
DHQLSKLHLGLFQGGG at 465/776 in sorghum Sb020833 (Type II)
LHLNNKLQLGLLPTNV at 462/700 in soybean Gm033946 (Type II)
LHLNNKLQLGLLPTKV at 444/670 in soybean Gm037915 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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