fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G32980 (ATH1)

Alias ATH1
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / BELL1
AtTFDBHomeobox / BEL
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeobox gene 1 (.1)
TAIR annotation Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. (.1)
Gene model
Gene model cDNA support
AT4G32980.1 26
Entry clone (w/o stop) RE_0564_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10073: other biological processes ->meristem maintenance
(P) 10227: developmental processes ->floral organ abscission
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(P) 10371: other cellular processes ->regulation of gibberellin biosynthetic process
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 8285: other cellular processes ->negative regulation of cell proliferation
(P) 90470: other biological processes ->shoot organ boundary specification
(P) 9640: response to abiotic or biotic stimulus ->photomorphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 4 4
Repression motif 
NKRNNELSLSLASDVS at 152/473 in AT4G32980.1
Repression motif
in putative orthologs		 
AAAASELSLTLCSNSI at 212/564 in sorghum Sb009940 (Type Ib)
AAAASELSLSLCSKSS at 183/539 in rice Os007096 (Type Ib)
GKLANELSLSLATSQP at 241/576 in poplar Pt008851 (Type Ib)
NANNKELSLSLATSTT at 173/502 in soybean Gm014154 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project ”w‚ª‚‚¢(9/71), •s–«(14/71), (phenotype_A20007,A20012:stem_”w‚/•s–«(‚³‚â’Z)/ŽíŽq‚܂΂ç)
short silique (A20007, A20012), sterile or low fertility (direct input, A20007, A20012), tall height (direct input, A20007, A20012)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment