fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G37790 (HAT22)

Alias HAT22
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description Homeobox-leucine zipper protein family (.1)
TAIR annotation Encodes homeobox protein HAT22, member of the HD-Zip II family. (.1)
Gene model
Gene model cDNA support
AT4G37790.1 66
Entry clone (w/o stop) RE_0568_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9414: response to stress ->response to water deprivation
(P) 9735: other biological processes ->response to cytokinin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 6 9
soybean 1 4 7 12
rice
sorghum 2 2 4
physcomitrella
Total 2 8 15 25
Repression motif 
IRLDPSLTLSLSGESY at 44/278 in AT4G37790.1
Repression motif
in putative orthologs		 
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type III)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type III)
HLDDAGLALGLSLGGG at 13/501 in sorghum Sb021965 (Type II)
MELALSLGDTPK at 2/280 in soybean Gm007056 (Type III)
NKREMELGLSLGDAAT at 8/383 in poplar Pt022588 (Type III)
ARRRCSLHLSLLRAHR at 244/292 in sorghum Sb021052 (Type II)
TGFEPSLSLGLSAETY at 51/273 in poplar Pt037290 (Type Ia)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type III)
SEAEPSLTLGLSRESY at 67/310 in soybean Gm047226 (Type II)
DLCNTGLGLGLGSFHA at 14/269 in poplar Pt040388 (Type II)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type III)
PPNEPSLTLGLSGESY at 56/283 in soybean Gm002000 (Type II)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type III)
MELALSLGDTSK at 2/309 in soybean Gm004319 (Type III)
SEAEPSLTLGLSRESY at 67/312 in soybean Gm047225 (Type II)
MELALSLGDTPK at 2/270 in soybean Gm052144 (Type III)
PSKEPSLTLGLSGKGY at 55/283 in soybean Gm029825 (Type Ia)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
SEAEPSLTLGLSRESY at 62/305 in soybean Gm012051 (Type II)
MELRLSLGEAAV at 2/377 in sorghum Sb015943 (Type III)
RAAVPELGLGLGVGIG at 22/377 in sorghum Sb015943 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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