fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G39100 (SHL1)

Alias SHL1
TF Classification
FioreDB
RARTFAlfin-like
AtTFDB
PlnTFDBPHD (v3.0), PHD (v1.0)
DATFPHD
TAIR short description short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
TAIR annotation Putative transcription factor containing a PHD finger and BAH motif, required for normal development (.1.2)
Gene model
Gene model cDNA support
AT4G39100.1 71
AT4G39100.2 61
Entry clone (w/o stop) RE_02A01_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 16569: other metabolic processes ->covalent chromatin modification
(P) 2000028: response to abiotic or biotic stimulus ->regulation of photoperiodism, flowering
(P) 31507: cell organization and biogenesis ->heterochromatin assembly
(F) 35064: protein binding ->methylated histone binding
(P) 35067: other metabolic processes ->negative regulation of histone acetylation
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5677: nucleus ->chromatin silencing complex
(P) 6325: cell organization and biogenesis ->chromatin organization
(P) 6342: transcription,DNA-dependent ->chromatin silencing
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(C) 785: other intracellular components ->chromatin
(F) 976: DNA or RNA binding ->transcription regulatory region sequence-specific DNA binding
(P) 9791: developmental processes ->post-embryonic development
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         dwarf (06717, direct input), 
         meristem-less (direct input, 06717), 
         abnormal seedling (06717, direct input), 
         abnormal branching (06717), 
         sterile or low fertility (06717), 
         abnormal flowering or growth (06717)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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