fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G02030 (PNY, BLR, BLH9, RPL, HB-6, VAN, LSN)

Alias PNY, BLR, BLH9, RPL, HB-6, VAN, LSN
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / BELL1
AtTFDBHomeobox / BEL
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
TAIR annotation Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. (.1)
Gene model
Gene model cDNA support
AT5G02030.1 49
Entry clone (w/o stop) IE_0091
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10051: developmental processes ->xylem and phloem pattern formation
(P) 10076: other biological processes ->maintenance of floral meristem identity
(P) 10077: other biological processes ->maintenance of inflorescence meristem identity
(P) 10089: other biological processes ->xylem development
(P) 10154: developmental processes ->fruit development
(P) 10223: developmental processes ->secondary shoot formation
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(P) 48367: developmental processes ->shoot system development
(P) 48457: developmental processes ->floral whorl morphogenesis
(P) 48645: developmental processes ->animal organ formation
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7389: developmental processes ->pattern specification process
(P) 80006: developmental processes ->internode patterning
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 1 3 4
Repression motif 
TNGGVSLTLGLHHQIG at 513/575 in AT5G02030.1
Repression motif
in putative orthologs		 
PLTSQGLSLCLSFQLD at 69/479 in poplar Pt033589 (Type Ib)
GSKGVSLALGLPQNNG at 428/479 in poplar Pt033589 (Type Ib)
GGGGVSLTLGLHQNNR at 504/668 in sorghum Sb032702 (Type Ib)
NAGGVSLTLGLHQNNN at 515/580 in rice Os021885 (Type Ib)
SNNGVSLTLGLHQNHH at 468/531 in soybean Gm049780 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project –{—tbushy(28/43), ‰ÔŒs‚Ì’¸‚½‚ñ‚Ö‚¢‚­‚قǁA‚³‚â‚Æ‚³‚â‚ÌŠÔŠu‚ª’Z‚¢(21/43), ‰ÔŒs‚Ì’¸‰è—D¨Žã(13/43), (phenotype_A20026,A20031:leaf_bushy/’¸‰è—D¨Žã/‚³‚â‚ÌŠÔŠu’Z)
abnormal silique (A20026, A20031), loss of apical dominance (direct input, A20026, A20031), bushy (direct input, A20026, A20031)
CRES-T phenotype from publication
CRES-T phenotype from bulk project aerial rosette (A20272-7)

Phenotype in ornamental plants
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