fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G04410 (NAC2, ANAC078)

Alias NAC2, ANAC078
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
TAIR annotation NAC family member, functions as a transcriptional activator, regulates flavonoid biosynthesis under high light. (.1)
Gene model
Gene model cDNA support
AT5G04410.1 114
Entry clone (w/o stop) RE_0643_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16021: other membranes ->integral component of membrane
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9644: response to abiotic or biotic stimulus ->response to high light intensity
(P) 9962: other metabolic processes ->regulation of flavonoid biosynthetic process
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5998: 3'-TGTTTTGTTTTGTGTTTGACA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean
rice
sorghum 1 1
physcomitrella 1 1
Total 1 2 3 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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