fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G06710 (HAT14)

Alias HAT14
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeobox from Arabidopsis thaliana (.1.2)
TAIR annotation Homeobox-leucine zipper protein. (.1), Homeobox-leucine zipper protein. (.2)
Gene model
Gene model cDNA support
AT5G06710.1 19
AT5G06710.2 14
Entry clone (w/o stop) IE_06A09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 5 6
rice
sorghum 1 1
physcomitrella
Total 2 1 9 12
Repression motif 
MELALSLGDNTK at 1/336 in AT5G06710.1
MELALSLGDNTK at 1/237 in AT5G06710.2
Repression motif
in putative orthologs		 
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type Ia)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type II)
MELALSLGDTSK at 2/309 in soybean Gm004319 (Type Ia)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type II)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type II)
MELALSLGDTPK at 2/280 in soybean Gm007056 (Type II)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type II)
NKREMELGLSLGDAAT at 8/383 in poplar Pt022588 (Type II)
MELALSLGDTPK at 2/270 in soybean Gm052144 (Type II)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type Ib)
Status
Plasmid construction -> The work interrupted(06Feb)
Plasmid construction -> The work interrupted(06Feb)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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