fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G19280 (RAG1, KAPP)

Alias RAG1, KAPP
TF Classification
FioreDBFHA (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFHA (v3.0), FHA (v1.0)
DATFFHA
TAIR short description ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2)
TAIR annotation kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region (.1), kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region (.2)
Gene model
Gene model cDNA support
AT5G19280.1 18
AT5G19280.2 15
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16021: other membranes ->integral component of membrane
(F) 16301: kinase activity ->kinase activity
(P) 16310: other metabolic processes ->phosphorylation
(F) 19901: protein binding ->protein kinase binding
(F) 46872: other binding ->metal ion binding
(F) 4721: hydrolase activity ->phosphoprotein phosphatase activity
(F) 4722: hydrolase activity ->protein serine/threonine phosphatase activity
(F) 50408: hydrolase activity ->[pyruvate kinase]-phosphatase activity
(F) 5515: protein binding ->protein binding
(C) 5576: extracellular ->extracellular region
(C) 5886: plasma membrane ->plasma membrane
(P) 6470: protein metabolism ->protein dephosphorylation
(P) 7165: signal transduction ->signal transduction
(P) 9934: other biological processes ->regulation of meristem structural organization
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN133: 3'-TCGGGAGTCTAGAGTATCGATA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1 2
sorghum 1 1
physcomitrella 1 1
Total 4 1 3 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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