fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G23260 (ABS, TT16, AGL32)

Alias ABS, TT16, AGL32
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / PISTILLATA
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
TAIR annotation Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. (.1), Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. (.2), Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA. (.3)
Gene model
Gene model cDNA support
AT5G23260.1 25
AT5G23260.2 19
AT5G23260.3 17
Entry clone (w/o stop) RE_02F09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 2000029: other cellular processes ->regulation of proanthocyanidin biosynthetic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45595: other cellular processes ->regulation of cell differentiation
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48316: developmental processes ->seed development
(P) 48481: developmental processes ->plant ovule development
(P) 51302: other cellular processes ->regulation of cell division
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 80060: developmental processes ->integument development
(P) 80155: other biological processes ->regulation of double fertilization forming a zygote and endosperm
(P) 8360: cell organization and biogenesis ->regulation of cell shape
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean
rice
sorghum
physcomitrella
Total 1 1 2
Repression motif 
RRETCNLELRLRPFHG at 101/247 in AT5G23260.1
RRETCNLELRLRPFHG at 101/252 in AT5G23260.2
RRETCNLELRLRPFHG at 101/238 in AT5G23260.3
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		partially viviparous
viviparous (direct input), light seed color (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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