Alias |
|
TF Classification |
FioreDB | MADS (Click to show phylogenetic tree) |
RARTF | |
AtTFDB | |
PlnTFDB | |
DATF | |
|
TAIR short description |
MADS-box transcription factor family protein (.1) |
TAIR annotation |
MADS-box transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 80 (TAIR:AT5G48670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_1305 |
External link |
|
Gene Ontology (GO) |
(P) 45944: other cellular processes |
->positive regulation of transcription from RNA polymerase II promoter |
(F) 46983: protein binding |
->protein dimerization activity |
(C) 5634: nucleus |
->nucleus |
(F) 982: transcription factor activity |
->transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
(F) 987: DNA or RNA binding |
->core promoter proximal region sequence-specific DNA binding |
|
miRNA/tasiRNA |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
2 |
3 |
soybean |
|
|
1 |
9 |
10 |
rice |
|
|
|
|
|
sorghum |
|
|
|
|
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physcomitrella |
|
|
|
|
|
Total |
|
|
2 |
11 |
13 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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