fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G45710 (RHA1, AT-HSFA4C)

Alias RHA1, AT-HSFA4C
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family (.1.2)
Gene model
Gene model cDNA support
AT5G45710.1 22
AT5G45710.2 12
Entry clone (w/o stop) RE_0960
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3924: hydrolase activity ->GTPase activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(P) 48527: developmental processes ->lateral root development
(P) 48530: developmental processes ->fruit morphogenesis
(F) 5525: nucleotide binding ->GTP binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9408: response to stress ->response to heat
(P) 9733: other biological processes ->response to auxin
(P) 9958: response to abiotic or biotic stimulus ->positive gravitropism
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice 1 1 2
sorghum 1 1
physcomitrella
Total 1 4 4 9
Repression motif 
VLGKPGLSLNLENHER at 92/249 in AT5G45710.2
VLGKPGLSLNLENHER at 188/345 in AT5G45710.1
Repression motif
in putative orthologs		 
VMPKPGLALNLMPQLE at 191/407 in poplar Pt018230 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment