fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G47370 (HAT2)

Alias HAT2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1)
TAIR annotation homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis. (.1)
Gene model
Gene model cDNA support
AT5G47370.1 69
Entry clone (w/o stop) RE_03B06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9641: response to abiotic or biotic stimulus ->shade avoidance
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
(P) 9826: other cellular processes ->unidimensional cell growth
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 4 5
rice
sorghum
physcomitrella
Total 2 8 10
Repression motif 
MMGKEDLGLSLSLGFS at 6/283 in AT5G47370.1
Repression motif
in putative orthologs		 
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type II)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type II)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type II)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type II)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		Žq—t‚͍ג·‚­A—t•¿‚ª’·‚¢(13/126), —t‚ׂ͍­‘½‚¢(16/72), ’¸‚½‚ñ‚̉Ԃª—Z‡(15/72), ‰Ô•Ù’Z‚¢(7/72), dwarf(17/72), (phenotype_A20006,A20013:leaf_×‚¢Ebushy/flower_’¸‰Ô—Z‡EŠJ‚«‘å/silique_‚Ú‚±‚Ú‚±/dwarf/•s–«)
thin stem (A22024), bushy (A20006, A20013), abnormal shaped silique (A20006, A20013), too many rosettes (A22024), narrow leaf (A20006, A20013, A20482, A20565), abnormal flower (A20006, A20013), sterile or low fertility (A20006, A20013), long petiole (A22024), wide leaf (A22024), dwarf (A20006, A20013), too many branchings (A22024), abnormal phyllotaxis (A22024)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project dark green leaf, short stamen, thickened leaf, sterile or low fertility (A20258-104)

Phenotype in ornamental plants
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