fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G50570 (SPL13, SPL13A)

Alias SPL13, SPL13A
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
TAIR annotation Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50670.1); Has 837 Blast hits to 836 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 836; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G50570.1 44
AT5G50570.2 37
Entry clone (w/o stop) RE_0973_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157c: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        short sepals and petals

         dwarf (direct input), 
         short pedicel (direct input), 
         abnormal sepal (direct input), 
         narrow leaf (direct input), 
         late flowering (direct input), 
         bushy (direct input), 
         too many rosettes (direct input), 
         abnormal petal (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         dark green leaf, 
         thickened leaf, 
         slow growth 
         (A20661-59)
         

         abnormal shaped leaf, 
         abnormal flower 
         (A20288-145)
         

         
         
         

         dwarf, 
         dark green leaf, 
         bushy 
         (A20429-92)
         

         dark green leaf, 
         dwarf, 
         slow growth 
         (A20662-109)
         

         dark green leaf, 
         abnormal stem 
         (A20662-118)
         

         over-accumulated anthocyanin 
         (A20289-156)
         

         
         

         dark green leaf, 
         thickened leaf, 
         slow growth 
         (A20660-40)
         

         dark green leaf, 
         thickened leaf, 
         slow growth, 
         abnormal stem 
         (A20661-78)
         

         dwarf, 
         bushy 
         (A20444-153)
         

         dark green leaf, 
         thickened leaf, 
         slow growth 
         (A20661-86)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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