fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G50670 (SPL13B)

Alias SPL13B
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDB
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
TAIR annotation Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50570.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G50670.1 22
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        



 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         dwarf, 
         bushy 
         (A20871-238)
         

         dwarf, 
         bushy 
         (A20842-8)
         

         abnormal leaf 
         (A20884-184)
         

         dwarf, 
         bushy 
         (A20867-152)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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