fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G52510 (SCL8)
Alias
SCL8
TF Classification
FioreDB
GRAS
(Click to show phylogenetic tree)
RARTF
GRAS
/ Repressor of ga-1
AtTFDB
GRAS
PlnTFDB
GRAS
(v3.0), GRAS (v1.0)
DATF
GRAS
TAIR short description
SCARECROW-like 8 (.1)
TAIR annotation
SCARECROW-like 8 (SCL8); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 1 (TAIR:AT1G21450.1); Has 2327 Blast hits to 2305 proteins in 315 species: Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 36; Plants - 2242; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT5G52510.1
96
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding
->sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(C) 5737: other cytoplasmic components
->cytoplasm
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
2
soybean
1
1
rice
1
1
sorghum
1
1
physcomitrella
Total
1
3
1
5
Repression motif
Repression motif
in putative orthologs
SQLAQ
RLRLSL
CFNVV at 463/666 in poplar
Pt003524
(Type II)
Status
Plasmid construction
-> The work interrupted(07Feb)
Plasmid construction
-> The work interrupted(07Feb)
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment