fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G59820 (ZAT12, RHL41)

Alias ZAT12, RHL41
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
TAIR annotation Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. (.1)
Gene model
Gene model cDNA support
AT5G59820.1 105
Entry clone (w/o stop) RE_01F08
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 10224: response to abiotic or biotic stimulus ->response to UV-B
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42538: response to abiotic or biotic stimulus ->hyperosmotic salinity response
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6979: response to stress ->response to oxidative stress
(F) 8270: other binding ->zinc ion binding
(P) 9408: response to abiotic or biotic stimulus ->response to heat
(P) 9409: response to stress ->response to cold
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9611: response to stress ->response to wounding
(P) 9631: response to stress ->cold acclimation
(P) 9643: response to abiotic or biotic stimulus ->photosynthetic acclimation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice
sorghum
physcomitrella
Total 1 1
Repression motif 
GKRVACLDLSLGMVDN at 139/162 in AT5G59820.1
LNLKLELGRTVY at 151/162 in AT5G59820.1
Repression motif
in putative orthologs		 
SKRVLCLDLSLALPMD at 162/193 in poplar Pt022468 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project embryonic lethal, low fertility
embryonic lethal (direct input), sterile or low fertility (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment