fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G62165 (FYF, AGL42)

Alias FYF, AGL42
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SOC1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
TAIR annotation Encodes a MADS box transcription factor. Expressed in quiescent center. (.1.2.3.4.5)
Gene model
Gene model cDNA support
AT5G62165.1 11
AT5G62165.2 9
AT5G62165.3 8
AT5G62165.5 3
AT5G62165.4 2
Entry clone (w/o stop) RE_02F11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10150: developmental processes ->leaf senescence
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 80187: developmental processes ->floral organ senescence
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9838: developmental processes ->abscission
(P) 9909: developmental processes ->regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 14 15
rice 1 2 3
sorghum 1 1 2
physcomitrella
Total 4 21 25
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment