fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G64220

Alias
TF Classification
FioreDBCAMTA (Click to show phylogenetic tree)
RARTF
AtTFDBCAMTA
PlnTFDBCAMTA (v3.0), CAMTA (v1.0)
DATFCAMTA
TAIR short description Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
TAIR annotation Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14517 Blast hits to 9081 proteins in 522 species: Archae - 46; Bacteria - 904; Metazoa - 8296; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3321 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G64220.2 33
AT5G64220.1 28
Entry clone (w/o stop) IE_07F02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1077: transcription factor activity ->transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 71275: other cellular processes ->cellular response to aluminum ion
(P) 9409: response to stress ->response to cold
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 3 1 4
rice 1 1 2
sorghum 1 1
physcomitrella
Total 2 4 2 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VIDDTSLHLSLSQDQL at 457/1054 in soybean Gm020511 (Type II)
NSSEMELHLRLVGLLS at 576/1054 in soybean Gm020511 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(07Feb)

          
Plasmid construction -> The work interrupted(07Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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