fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G65510 (PLT7, AIL7)

Alias PLT7, AIL7
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / AINTEGUMENTA
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description PLETHORA 7, AINTEGUMENTA-like 7 (.1)
TAIR annotation AINTEGUMENTA-like 7 (AIL7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 6 (TAIR:AT5G10510.2); Has 7565 Blast hits to 5160 proteins in 254 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 7501; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G65510.1 0
Entry clone (w/o stop) RE_0147_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10492: other biological processes ->maintenance of shoot apical meristem identity
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 60771: developmental processes ->phyllotactic patterning
(P) 60772: developmental processes ->leaf phyllotactic patterning
(P) 60774: signal transduction ->auxin mediated signaling pathway involved in phyllotactic patterning
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9873: signal transduction ->ethylene-activated signaling pathway
(P) 9887: developmental processes ->animal organ morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 1 3
Repression motif 
AAKRHKLKLALESPSS at 415/498 in AT5G65510.1
Repression motif
in putative orthologs		 
GGAAKRLKLSLESEQK at 402/509 in soybean Gm025411 (Type II)
GGAAKRLRLSLESEQK at 403/507 in soybean Gm000392 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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