fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G02550 (LBD41)

Alias LBD41
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 41 (.1)
TAIR annotation LOB domain-containing protein 41 (LBD41); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 40 (TAIR:AT1G67100.1); Has 601 Blast hits to 600 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G02550.1 95
Entry clone (w/o stop) RE_02C09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR843: 3'-AGGTTACTTCGAGCTGGATTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 2 5
soybean 1 2 3
rice 1 1 2
sorghum 2 2 4
physcomitrella
Total 3 6 5 14
Repression motif 
GSGEIKLDLTLRLEPV at 220/263 in AT3G02550.1
Repression motif
in putative orthologs		 
SNGISGLELGLDLTLG at 187/233 in poplar Pt000766 (Type II)
SNGISGLELGLDLTLG at 250/296 in poplar Pt000765 (Type Ia)
RAAEDGLDLTLGLPLA at 261/297 in sorghum Sb007439 (Type III)
RNEIAGLGLDLALGLE at 174/221 in poplar Pt019114 (Type II)
QPPPMGLDLTLGLLTS at 304/407 in sorghum Sb033188 (Type III)
SGNEIGLELTLGFEPV at 244/293 in soybean Gm051216 (Type II)
DGSDVRLDLTLGLVSE at 234/244 in poplar Pt042067 (Type III)
SGNEIGLELTLGFEPV at 239/288 in soybean Gm035214 (Type Ia)
EVHDAGLDLTLGLPPP at 256/307 in rice Os000273 (Type III)
EEEEVGLELTLGFEPV at 292/429 in sorghum Sb032897 (Type II)
ASSLIGLRLQLPAAGE at 325/429 in sorghum Sb032897 (Type II)
RTDDVGLELTLGFEPV at 301/345 in soybean Gm023557 (Type II)
QSDDSDLSLELTLALV at 229/241 in poplar Pt034504 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID50082 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, 1 line  no phenotype   
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