fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G49940 (LBD38)

Alias LBD38
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 38 (.1)
TAIR annotation LOB domain-containing protein 38 (LBD38); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 37 (TAIR:AT5G67420.1); Has 581 Blast hits to 580 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G49940.1 56
Entry clone (w/o stop) RE_03E11_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 4 2 6
soybean 3 4 7
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 4 5
Total 10 12 22
Repression motif 
QQPSSELDLSLIPIYP at 184/247 in AT3G49940.1
Repression motif
in putative orthologs		 
GNGAEQLELDLTLKVK at 294/365 in physcomitrella Pp021737 (Type II)
TPRADQLELDLTLTVK at 294/417 in physcomitrella Pp014451 (Type III)
GPMRTDLDLRLMYQRV at 162/207 in poplar Pt022478 (Type II)
KVQHNDLDLGLTPSFS at 178/238 in poplar Pt037620 (Type II)
VGSTEHLDLGLTLKVK at 288/356 in physcomitrella Pp032886 (Type III)
QTATTDLNLRLTPSFL at 177/240 in soybean Gm029866 (Type III)
VGSTEHLDLGLTLKVK at 294/362 in physcomitrella Pp026919 (Type III)
LQAQPNLDLRLTPVFS at 177/227 in soybean Gm011992 (Type II)
YGQTTDLDLRLMYQGS at 161/206 in poplar Pt032094 (Type II)
QTATTDLNLRLTPSFL at 180/243 in soybean Gm001959 (Type III)
QEQQPNLDLRLTPVFL at 180/230 in soybean Gm047285 (Type II)
EAPSCDLGLCLSPGSP at 155/204 in rice Os013624 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID50087 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, not obtained     
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