fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G00730 (AHDP, ANL2)

Alias AHDP, ANL2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ANTHOCYANINLESS2
AtTFDBHomeobox / HD-Zip IV
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
TAIR annotation Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development (.1), Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development (.2)
Gene model
Gene model cDNA support
AT4G00730.1 95
AT4G00730.2 86
Entry clone (w/o stop) RE_01H05_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42335: developmental processes ->cuticle development
(P) 43481: response to abiotic or biotic stimulus ->anthocyanin accumulation in tissues in response to UV light
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(P) 48765: developmental processes ->root hair cell differentiation
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
(P) 9827: other cellular processes ->plant-type cell wall modification
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5654: 3'-CCACCTTCTACAACCCTAAAT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 8 12
soybean 1 7 12 20
rice 1 1 1 3
sorghum 1 1 6 8
physcomitrella 1 3 4
Total 4 13 30 47
Repression motif 
VYASSGLSLALEQPER at 63/802 in AT4G00730.1
VYASSGLSLALEQPER at 63/570 in AT4G00730.2
CPFLTHLSLCLT at 563/570 in AT4G00730.2
Repression motif
in putative orthologs		 
MFNSPGLSLALQQPNI at 55/820 in poplar Pt039764 (Type II)
GIGGPSLDLDLIPTSS at 191/725 in poplar Pt027686 (Type III)
GLGGPSLDLDLLPGSS at 189/722 in soybean Gm025110 (Type III)
PALGPSLDLDLLSGGS at 181/707 in sorghum Sb011181 (Type III)
FFASPALSLSLAGIFR at 21/761 in poplar Pt029047 (Type III)
GFGATGLSLGLQTNME at 50/1043 in sorghum Sb023592 (Type II)
PLGYMALCLRLCSVII at 1032/1043 in sorghum Sb023592 (Type II)
LFASPALSLSLAGIFR at 25/762 in soybean Gm038266 (Type III)
GESRTHLRLSLPCGAH at 889/1026 in sorghum Sb030572 (Type III)
LGGPPSLDLDLLSGCS at 182/700 in sorghum Sb003177 (Type III)
GIGGPSLDLDLIPTSS at 191/707 in poplar Pt027687 (Type III)
FASSPALSLALDNAGG at 28/804 in rice Os009241 (Type Ia)
GPAPSSLNLDLLPAAG at 192/721 in soybean Gm020365 (Type III)
MFNSPGLSLALQQPNI at 54/823 in poplar Pt018110 (Type Ia)
FFASPALSLSLAGIFR at 21/759 in poplar Pt011816 (Type III)
MFNSPGLSLALQTSID at 71/835 in soybean Gm005897 (Type II)
MFNSPGLSLALQSDID at 57/820 in soybean Gm026113 (Type Ia)
FTSSPALSLALADAVA at 18/806 in rice Os018491 (Type II)
FSSSPALSLGLDNAGG at 32/987 in sorghum Sb024877 (Type Ia)
GLGGPSLDLDLLPGSS at 189/718 in soybean Gm045465 (Type III)
LFSSSSLSLSLAGIFR at 20/751 in soybean Gm017137 (Type III)
PAPAPSLNLDLLPAGT at 189/713 in soybean Gm013033 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID50092 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, 1 line  no phenotype   
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