fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G21750 (ATML1)

Alias ATML1
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ANTHOCYANINLESS2
AtTFDBHomeobox / HD-Zip IV
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
TAIR annotation Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. (.1), Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. (.2)
Gene model
Gene model cDNA support
AT4G21750.2 85
AT4G21750.1 83
Entry clone (w/o stop) RE_0561
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48825: developmental processes ->cotyledon development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
(P) 90627: other cellular processes ->plant epidermal cell differentiation
(P) 9845: developmental processes ->seed germination
(P) 9913: other cellular processes ->epidermal cell differentiation
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR408: 3'-TCGGTCCCTTCTCCGTCACGT-5'
5'--3'

miRN130: 3'-ATAGATAGATGACACTTTGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 13 15
soybean 1 4 21 26
rice 1 3 4
sorghum 2 6 8
physcomitrella 2 2 4
Total 3 9 45 57
Repression motif
Repression motif
in putative orthologs
FASSPALSLALDNAGG at 28/804 in rice Os009241 (Type III)
LGGPPSLDLDLLSGCS at 182/700 in sorghum Sb003177 (Type III)
MEEEKSLALELAASSM at 274/782 in soybean Gm000301 (Type III)
FFASPALSLSLAGIFR at 25/751 in soybean Gm040846 (Type III)
MFNSPGLSLALQQPNI at 55/820 in poplar Pt039764 (Type III)
GESRTHLRLSLPCGAH at 889/1026 in sorghum Sb030572 (Type II)
FSSSPALSLGLDNAGG at 32/987 in sorghum Sb024877 (Type III)
GLGGPSLDLDLLPGSS at 189/718 in soybean Gm045465 (Type III)
GLGGPSLDLDLLPGSS at 189/722 in soybean Gm025110 (Type III)
MFNSPGLSLALQTSID at 71/835 in soybean Gm005897 (Type III)
GFGATGLSLGLQTNME at 50/1043 in sorghum Sb023592 (Type III)
PLGYMALCLRLCSVII at 1032/1043 in sorghum Sb023592 (Type III)
LFASPALSLSLAGIFR at 25/762 in soybean Gm038266 (Type III)
GLGGPALDLDLDLDLI at 148/668 in poplar Pt023720 (Type III)
FFASPALSLSLAGIFR at 21/759 in poplar Pt011816 (Type III)
MEEEKSLTLELAASSM at 274/747 in soybean Gm025492 (Type III)
MFNSPGLSLALQQPNI at 54/823 in poplar Pt018110 (Type III)
GPAPSSLNLDLLPAAG at 192/721 in soybean Gm020365 (Type III)
MFNSPGLSLALQSDID at 57/820 in soybean Gm026113 (Type III)
GIGGPSLDLDLIPTSS at 191/707 in poplar Pt027687 (Type III)
FTSSPALSLALADAVA at 18/806 in rice Os018491 (Type III)
GIGGPSLDLDLIPTSS at 191/725 in poplar Pt027686 (Type III)
PALGPSLDLDLLSGGS at 181/707 in sorghum Sb011181 (Type III)
PAPAPSLNLDLLPAGT at 189/713 in soybean Gm013033 (Type III)
FFASPALSLSLAGIFR at 21/761 in poplar Pt029047 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo

abnormal seedling (direct input)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

ID Species Construct Date Comment Phenotype Photo
ID50096 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, not obtained     
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