fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G56860 (GATA21, GNC)

Alias GATA21, GNC
TF Classification
FioreDBGATA (Click to show phylogenetic tree)
RARTFC2C2(Zn) / GATA
AtTFDBC2C2-Gata
PlnTFDBC2C2-GATA (v3.0), C2C2-GATA (v1.0)
DATFC2C2-GATA
TAIR short description GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1)
TAIR annotation Encodes a member of the GATA factor family of zinc finger transcription factors. (.1)
Gene model
Gene model cDNA support
AT5G56860.1 22
Entry clone (w/o stop) RE_0517_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10187: developmental processes ->negative regulation of seed germination
(P) 10255: signal transduction ->glucose mediated signaling pathway
(P) 10380: other cellular processes ->regulation of chlorophyll biosynthetic process
(P) 10468: other metabolic processes ->regulation of gene expression
(F) 1085: protein binding ->RNA polymerase II transcription factor binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(P) 30154: other cellular processes ->cell differentiation
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 51171: other metabolic processes ->regulation of nitrogen compound metabolic process
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5667: other intracellular components ->transcription factor complex
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9740: signal transduction ->gibberellic acid mediated signaling pathway
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9910: developmental processes ->negative regulation of flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice 1 1
sorghum
physcomitrella
Total 1 1
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50106
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, not obtained  
            
            
          

         

         

          Comment