fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G53200 TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1)

>AT5G53200.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BsrBI, BsrFI, BssHII, BstAPI, BstEII, BstXI, Bsu36I, Cfr10I, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaII, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, MscI, MspI, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PspOMI, PstI, PvuI, RsrII, SacI, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, StyI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 4202
AccI GT|[AC][TG]AC 7, 2455, 2559, 3917, 5380
AccII(FnuDII) CG|CG 2748, 5414, 5424
AciI C|CGC 1487, 5413
AclI AA|CGTT 6261
AflIII A|CPuPyGT 841, 2091, 3028, 4651
AluI AG|CT 593, 1667, 1848, 2183, 2210, 2314, 4279, 4657, 4802, 5117, 6205, 6521, 6568, 6842
ApoI Pu|AATTPy 399, 886, 917, 1060, 1108, 1169, 1281, 1379, 1980, 2166, 2362, 2574, 2723, 2945, 3151, 3439, 3570, 4087, 4268, 4635, 4928, 5267, 5471, 5610, 5724, 6470
AseI AT|TAAT 938, 1074, 1692, 3036, 3044, 3177, 3206, 4099, 4406, 5594, 6076
AvaII G|G[AT]CC 1589
BanI G|GPyPuCC 4202
BclI T|GATCA 251, 5935
BfaI C|TAG 546, 881, 2079, 2342, 2802, 3474, 4277, 4281, 4389, 4655, 5181, 5401, 6032, 6203, 6844
BglII A|GATCT 359, 4545
BsaAI PyAC|GTPu 531, 840, 964, 3055, 4886
BsaBI GATNN|NNATC 2418, 3369, 5410
BsaHI GPu|CGPyC 5113
BsaJI C|CNNGG 1207, 1708, 5415
BslI CCNNNNN|NNGG 2965, 3987
Bsp1286I G[GAT]GC[CAT]|C 1756
BspDI AT|CGAT 1010, 1223, 3446
BspHI T|CATGA 87, 271, 586, 6491
BspT107I(HgiCI) G|G[TC][AG]CC 4202
BsrDI GCAATGNN| 2400
BsrGI T|GTACA 2010, 4562, 4733, 4830
BsrI ACTGGN| 852
BssKI |CCNGG 1207, 1708, 5042
BssSI C|TCGTG 352, 4356
BstBI TT|CGAA 369, 2672, 3487, 4556
BstF5I GGATGNN| 1212, 1404, 2406
BstNI CC|[AT]GG 1207, 1708, 5042
BstUI CG|CG 2748, 5414, 5424
BstYI Pu|GATCPy 359, 3824, 4545
BstZ17I GTA|TAC 7, 2559
BtgI C|CPuPyGG 5415
BtrI CAC|GTC 4054
BtsI GCAGTGNN| 467
Cac8I GCN|NGC 4912, 5116, 6198
ClaI AT|CGAT 1010, 1223, 3446
DdeI C|TNAG 52, 436, 491, 646, 1818, 2790, 3655, 4611, 6560
DpnI GA-CH3|TC 232, 250, 358, 412, 520, 1224, 1837, 3443, 3823, 4285, 4544, 5934, 6130, 6360
DpnII |GATC 232, 250, 358, 412, 520, 1224, 1837, 3443, 3823, 4285, 4544, 5934, 6130, 6360
DraI TTT|AAA 977, 1064, 1687, 2663, 3169, 4417, 5443, 5605, 5705, 5719, 5986, 6100, 6380
DraIII CACNNN|GTG 4356, 4764
EcoRI G|AATTC 5267
EcoRV GAT|ATC 2252, 3301, 6783, 6819
Fnu4HI GC|NGC 1571, 1850
HaeIII GG|CC 1814, 3086, 3978, 6576, 6672
HincII GTPy|PuAC 623, 1607, 1619, 3906, 3937, 6029
HindIII A|AGCTT 594, 2315, 6569
HinfI G|ANTC 90, 440, 826, 1080, 1298, 1303, 1662, 2427, 2643, 2919, 3495, 4192, 5537, 5624, 6278, 6391, 6509
HpaI GTT|AAC 623, 1619
Hpy188I TCN|GA 394, 660, 861, 2646, 2864, 2916, 4195, 6759, 6779, 6815
Hpy99I CG[AT]CG| 678, 2775, 4153, 4162, 5111
HpyCH4III ACN|GT 275, 405, 835, 1638, 2386, 2797, 3584, 4151, 4735, 5088, 5154, 5501, 6421
HpyCH4IV A|CGT 530, 663, 676, 839, 963, 1217, 1465, 1786, 2624, 3054, 3273, 4053, 4325, 4698, 4809, 4885, 6260, 6371, 6386, 6635
HpyCH4V TG|CA 354, 462, 970, 1505, 1743, 1851, 2188, 2240, 2395, 3470, 3731, 3972, 4489, 4675, 5466, 5943, 6199
KpnI GGTAC|C 4202
MboI |GATC 232, 250, 358, 412, 520, 1224, 1837, 3443, 3823, 4285, 4544, 5934, 6130, 6360
MfeI C|AATTG 5550
MseI T|TAA 32, 219, 261, 536, 571, 590, 622, 695, 844, 908, 937, 976, 987, 1063, 1073, 1111, 1358, 1480, 1524, 1596, 1618, 1686, 1691, 1699, 1713, 1908, 1927, 2020, 2026, 2030, 2311, 2354, 2475, 2618, 2632, 2662, 2742, 2808, 2832, 2846, 2854, 2885, 3035, 3043, 3047, 3064, 3123, 3142, 3168, 3176, 3205, 3213, 3283, 3407, 3432, 3479, 4098, 4249, 4311, 4329, 4395, 4405, 4416, 4449, 4466, 4475, 4669, 4701, 4706, 4794, 4798, 4816, 5196, 5345, 5408, 5442, 5448, 5458, 5517, 5554, 5570, 5593, 5604, 5704, 5718, 5797, 5966, 5985, 6055, 6075, 6099, 6176, 6245, 6265, 6379, 6458, 6564, 6611
MslI CAPyNN|NNPuTG 1513, 3468, 3504, 3889
MspA1I C[AC]G|C[GT]G 1849, 5415
MwoI GCNNNNN|NNGC 291, 4912
N.BstNBI GAGTCNNNN|N 1308
NdeI CA|TATG 146, 1389, 1500, 2816, 4713, 4729
NlaIII CATG| 86, 270, 585, 943, 968, 1428, 1741, 1745, 1857, 2090, 2423, 2706, 2922, 3027, 3255, 3468, 3889, 4188, 4525, 4650, 4743, 4761, 4892, 5351, 5541, 6193, 6446, 6490
NlaIV GGN|NCC 4202
NsiI ATGCA|T 971, 1744, 2241
NspI PuCATG|Py 969, 1742, 2091, 3028, 4651, 6194
PacI TTAAT|TAA 2030, 3047, 4798
PciI A|CATGT 2091, 3028, 4651
PshAI GACNN|NNGTC 4155
PsiI TTA|TAA 903, 1104, 1896, 2653, 3322, 4723, 5228, 5307, 5482, 5507, 5614
PspGI |CC[AT]GG 1207, 1708, 5042
PvuII CAG|CTG 1849
RsaI GT|AC 347, 445, 528, 532, 837, 965, 2009, 2158, 2510, 2588, 3056, 3581, 4201, 4561, 4716, 4732, 4739, 4829, 4883, 4887, 6349, 6619
SacII CCGC|GG 5415
Sau3AI |GATC 232, 250, 358, 412, 520, 1224, 1837, 3443, 3823, 4285, 4544, 5934, 6130, 6360
Sau96I G|GNCC 1589, 6577, 6672
ScaI AGT|ACT 348, 6350
ScrFI CC|NGG 1207, 1708, 5042
SfcI C|TPuPyAG 1637, 2460
SmlI C|TPyPuAG 771
SnaBI TAC|GTA 531, 964, 3055, 4886
SpeI A|CTAGT 6033
SspI AAT|ATT 22, 1695, 1877, 1921, 2667, 3075, 3130, 3174, 3246, 4453, 4479, 5488, 5600, 5619, 5962, 6181
StuI AGG|CCT 1815, 3087
SwaI ATTT|AAAT 2664
Taqƒ¿I T|CGA 242, 368, 671, 679, 869, 1009, 1222, 1295, 1300, 1664, 1781, 2248, 2254, 2318, 2613, 2640, 2671, 3091, 3117, 3445, 3486, 4506, 4555, 6642
TfiI G|A[AT]TC 90, 440, 826, 1080, 1298, 1662, 2643, 2919, 3495, 5537, 5624, 6278, 6391, 6509
TseI G|C[AT]GC 1571, 1850
Tsp45I |GT[CG]AC 2094, 2794, 3271, 3356, 6638, 6794
Tsp509I |AATT 34, 74, 168, 175, 210, 398, 632, 697, 726, 885, 916, 939, 954, 1059, 1107, 1133, 1168, 1200, 1280, 1378, 1540, 1689, 1833, 1979, 2004, 2022, 2028, 2165, 2196, 2257, 2361, 2489, 2496, 2553, 2573, 2616, 2722, 2806, 2830, 2857, 2875, 2944, 3041, 3045, 3140, 3150, 3203, 3348, 3428, 3438, 3489, 3522, 3569, 3648, 3666, 3792, 3814, 4086, 4100, 4242, 4267, 4331, 4342, 4403, 4468, 4587, 4634, 4666, 4688, 4703, 4774, 4796, 4819, 4865, 4927, 4943, 5010, 5224, 5266, 5309, 5432, 5470, 5509, 5549, 5609, 5650, 5675, 5714, 5723, 5731, 5760, 5799, 5868, 5885, 5981, 6062, 6073, 6135, 6247, 6310, 6469, 6513, 6592, 6690, 6775, 6833
TspRI NNCA[CG]TGNN| 231, 256, 406, 467, 2798, 4148, 4738, 5091, 6739
XbaI T|CTAGA 547, 882, 2803
XcmI CCANNNNN|NNNNTGG 876
XmnI GAANN|NNTTC 6328


Click here to view TAIR data

>AT5G53200 genomic sequence (4139-4202,4496-4583,5018-5186,) length:6871
aacaatgtat acccaaccag caatattgtc gtcttaattg gcatccctgc 
50
tactaagata tagttatctt ctcaaaatta ttactttcat gattctaaaa 
100
ctaatactac tgattacccc caaagaagaa aaacaaaata caatacatat 
150
gagagtaaat aaaaagtata atttgtaatt atgatgatag gactaactaa 
200
caagtcatac caatttttcc ttaaaaaaac actgatctat tgttcgagaa 
250
tgatcagtgt ctttaacaag tcatgaccgt ctaatgctgg tgaagcctac 
300
tgactaaaaa tgatgttaca cgaatagtat cactctatca ctctatcagt 
350
actcgtgcag atctattgtt cgaagaagtt tctgtgggtt tttttctgaa 
400
attccactgt gctgatcttc acaacacatt attctgctga gattcggtac 
450
tattgttgtc ttgtgcagtg cggaatatct ttagttagat acttagatat 
500
actatataaa gtttacgatt tgatcttggg tacgtactta actttctcta 
550
gagtatttat attattttgt ttttaatgtt gagtttcatg attaagcttg 
600
gtcaaagaat gagatggtca aagttaacga atgaattagt tgaagtctta 
650
gtttagaaag tcagacgttt actcgaaacg tcgatatgct actattttaa 
700
ttttgttatg tatatatcca taatcataat ttgtgagata agccgtattt 
750
ttagattttt tttgttctcc ctcaagtttg tatcattata ttacataata 
800
aaaagcgaga ggagatagta aggactgaat ctaatacagt acgtgttaag 
850
gactggcaaa ctctgaccaa tcgaagtttg gtctagaatt tgttttctat 
900
ttttataagt taatcaaaat ttattagatt atgttacatt aattcatgtg 
950
ttgaaaattg acatacgtac atgcatttta aaaatatatt aaactaaaag 
1000
tcaaatacta tcgatattca atcaatcaat ctcttgacaa ctaaacttta 
1050
tgttgttgaa aattttaaaa tacattaatg gattcatttt ttattagtat 
1100
ttattataaa ttttaactat gtcaaactat gacaaattat caatataaga 
1150
acaaaaactc aatatatcaa attcaaacat tcatacaaaa acaacaaaaa 
1200
aaattaccct ggatgaaaac gtatcgatcc aaaaaaccag aacaactcac 
1250
aaatacgata gaacaaaata gaagaagaag gaatttcaca cctcattcga 
1300
ttcgagtcta aaagaaataa actacatcgt ctcctcattt ctcataactc 
1350
tatgacctat taaatgttag tcaaatataa atttacttca tatgttgttt 
1400
gtggatgggg ctactcactc atatatagtc atgtagtgaa gaaaccttat 
1450
catcttctaa aatatcacgt tttccatctt gttaaaaacc gcaaatactc 
1500
atatgttgca taagagtgta agcggttaag tgaatatact caattcgtat 
1550
ataacgcttt tccaactgaa agcagcagaa acattcattg gaccacctta 
1600
aatgttgtca acaatgttgt taaccaatca aaacatctac agttcaacaa 
1650
gttttattat ttgattcgag cttttacttt gtggggttta aattaatatt 
1700
ttaatgaccc aggtttaata aaatataaaa tactcctata tacatgcatg 
1750
tatgggggca ctcgtataat atgtgtaatc attcgatacg ttacaaataa 
1800
atatatgttt atttaggcct aagaatgtta gttgaattga tctaccaaca 
1850
gctgcaacca tgtttcaaat cggttcaata tttcttttct ttctcttata 
1900
actttcttat taactacaaa aatattcctt aatagcagtt cttttacgag 
1950
taatctatct tcttttcttg tgtaatatca aatttattgt tcaaccaaaa 
2000
agaataattt gtacaagagt tttaatttta attaaagtgg aaagagaaat 
2050
ggatagtgat tgctattatg aaaaatcttt ctaggaggca acatgtcaca 
2100
tctttgttgt tgttgatata atcaaataat agaaaaggta atcacatctt 
2150
tgtccttttg taccagaatt ttagacatta gtttagctat gcaaaccaat 
2200
ttcgttcttt tagctccaaa ctaaagacac attttcattg atgcattctt 
2250
cgatatcgaa ttgatttgtt tatcaaaagt ttatgaaaat catttatatt 
2300
gctatattgt atttaagctt cgagtaaaga gatattttac caactaggct 
2350
tcctattaaa aaaattccaa atctatcaca taatacacag tttctatgca 
2400
atgaggatga tgcgatatac atcacatgac tcgcctcaca cgatgtcttt 
2450
cgccgtagac tacagatttc ttccgtttaa tcttttatcc aattatgaat 
2500
tatctggtag ggtactttat attttgaaaa tctctttcgt gagaatatga 
2550
tagtaattgt atactttctt acaaaattta ttgagaagcg tactttatat 
2600
atgatgtttc tcactcgaat taaatacgtt agtttaatgg gtcgattcag 
2650
atttataata gatttaaata tttcgaagaa aacgcaaatc agggattttg 
2700
gttgtatcat gtgtgagaga ttgaatttct ccagaagcac tcattaaatc 
2750
gcgtgtgtaa ggagttgcca tacagcgtcg tatgtaatgt cttagtcact 
2800
gttctagaat taaaacatat gtcaaatgta gaattaaaaa acaggggtta 
2850
aaatgttaaa ttattcggag aagtggaatt attatattaa aaacattgtg 
2900
tgattttggg ataaaatctg aatcatgttt tttattgtgc caaaaaattt 
2950
ctgtttcaac ctcttcgtgg agatgaaaga aaagtcaatc gggaatgaga 
3000
cttcttgtat aacgaatgaa aatatgaaca tgttgattaa tgaattaatt 
3050
aacatacgta ctatattaag tgggaatatt aggtataggc cttcgatttt 
3100
ccgttttgtt tggttttttc gattttaata atatttctct aaattaaaat 
3150
aaattttagt ttggtttatt taaaatatta ataaaataat ataaataact 
3200
atctaattaa tatattaaaa agtattttct atatatattg atataaatat 
3250
tattcccatg ttttatattg ggtgacgtta tcttttaagt aaagttgtaa 
3300
gatatctaac ttattcctac attataataa ctatcaaaat aaaataacta 
3350
attgtagtga caatgatgac tatcaaaata tgtatgtgtt ttggctcaaa 
3400
catagcgttt aataacaaac acaatggaca attttaataa atttgatcga 
3450
ttagattttg tttcattttc atgcactaga ttaaggttcg aattagattc 
3500
attttagtgt atatagtgaa actaatttgt tactatatgg aaaaaaaaat 
3550
aagtttattt ttggttcaag aatttttatt cggtacggtt tggtgtgtat 
3600
gtccaaccct gaaaaaaaaa cttgaaaaac taataaccta ataacaacta 
3650
attttcttag aaatacaaat tggacttgaa tacaaaaatg gaaagaacaa 
3700
caacaaatca ataactaaaa catcgttgaa cttgcatctg ccaaataaaa 
3750
atcaataaat cccattattc taaaaagata gtaggtttag aaaaattgaa 
3800
taaatggaaa aaaaaaattg ttaggatcta cgaatgagaa caaagttagc 
3850
cttcaaaata cttacaaatc ccaataaaag acttcatctc catgtgtatt 
3900
tgagtgtcaa cgacaagtct acacaaaggg taagaggtca acaagaccac 
3950
acaacacttc ttactattag ttttgcaaag gccgttcgtt ggacatttcc 
4000
ttctctctcc tcccctcttc ttcttcttgt tcgctctata aactctcatc 
4050
tctcacgtct ttttttcctt acattctcca aactcaaaat ttcatcacat 
4100
taatttctct ctatttttct tttcttactt caatagtaAT GGATAACACT 
4150
GACCGTCGTC GCCGTCGTAA GCAACACAAA ATCGCCCTCC ATGACTCTGA 
4200
AGgtacctct ctattctcta tatattttct atttcctaaa tccaatttta 
4250
ttaaacatct tgaaaataaa tttagttcct agctaggatc atattctctt 
4300
tgtatatatt cgttaaaacg agggatacgt ttaattactt ctaaattagt 
4350
tacacctcgt gctgactaaa agacttatca agattagttt ctagttttaa 
4400
caaaaattaa tatcttttta aaaagtttat atttgtcttt ttttgttagt 
4450
ttaatattgt tttgagttta attggtttaa tattgttatt tgcagAAGTG 
4500
AGCAGTATCG AATGGGAGTT TATCAACATG ACTGAACAAG AAGAAGATCT 
4550
CATCTTTCGA ATGTACAGAC TTGTCGGTGA TAGgtaacaa tttcttcttc 
4600
ttctactttt tctaagatta tcccagcata aaataaattt tatattttag 
4650
acatgtctag ctaaaacaat ttaatatgca ggtatataca attttacata 
4700
cgttaattta agcatatgta ctttataaca tatgtacagt gtaccatgtt 
4750
gtaggggaag cacatggtgt ccactaattt tctaaaaaaa gacatttaat 
4800
taaagctatc acgttcatta aattatatat gtacacacat atatatagag 
4850
ataaaaataa gaacctaatt tactattctt atcagtacgt actcatgtat 
4900
ataaatgctt ggctggctca aaaatggaaa tttttgaact gacaaattat 
4950
attttattat gaaaatataa atgctaatgc ttgggataaa aatgtttttt 
5000
tttttctttt gaattagGTG GGATTTGATA GCAGGAAGAG TTCCTGGAAG 
5050
ACAACCAGAG GAGATAGAGA GATATTGGAT AATGAGAAAC AGTGAAGGCT 
5100
TTGCTGATAA ACGACGCCAG CTTCACTCAT CTTCCCACAA ACATACCAAG 
5150
CCTCACCGTC CTCGCTTTTC TATCTATCCT TCCTAGtgtt tttgttttta 
5200
agccaacgaa aaaagaaaat aaaaaaatta taatagatgt atagtagtgg 
5250
ttcttgttag tttgaagaat tcatcatcta ttgttttctt tttgttgtta 
5300
tttcatttat aatttttata gtataggttt catttggtaa tcaactttaa 
5350
tccatgcggt taggtttttt tattttctcg tctacgactt ttatatccac 
5400
aactagattt taatccgcgg tatatcgcgg tataatttac tttttaaagt 
5450
taatatatat taaaacttgc aaattttatt tttataaaat atttttattt 
5500
tacagtttat aattgttatt aagtaacgct atacaacgaa tccatgagac 
5550
aattgttaaa aaactgaagt tttaaccctt actaaaacag catattaata 
5600
atattttaaa aatttataaa tattgattca aatacatcca ccatataact 
5650
caattccaaa ataaaatctg ttctgtaatt tctttaccca tcccgtgatt 
5700
tatttttaaa gtagtaattt taaaaatttg agaattattt attacatata 
5750
aaagttttac aaattgtatc attctctaat acatttatat tttatagttt 
5800
aattttatat atagtaacat tttatatttt atattctcta atatatttta 
5850
tattctctaa tacatcagta attagaaagt aaaaaaaatt gtgtattaga 
5900
tttagtcctt tgaaagaact tatcaagagg aaactgatca tttgtgcaaa 
5950
aatggttggg taatatttta actaatgaca ataattttaa atagtaaaaa 
6000
aaaaaaaaga aatactccat tagttatagt tgactagtat attttgaaga 
6050
aactacttaa aaaaattatt acagaattaa tgacataatg tatctatact 
6100
ttaaaaaaaa tgtaactaaa ataaaaaccc cgatccaatt ctaaccaaaa 
6150
gttatgaaca cttattttca caatcactta aatattaggt gttacatgct 
6200
tgcactagct atatatatgt aggactatga agtatgaagt atgaacttaa 
6250
tttttctata aacgttttaa gaaataaaga atctatatat agtattgcct 
6300
ttcatacaaa aaattatcag tttgaaaact ttctaccaac acgataaaaa 
6350
gtactatatg agatcatcct aaacgtctat ttaaaaaacg tgattctcat 
6400
tggtaaacga ctaatgaacg gacggtttgc gtctaaaact aacttttcat 
6450
ggacaggatt taacggatag aattttccat tatatgattt tcatgattac 
6500
gaaccaaacg attcaattct tcagctatat gtcgtttcac ataaactcac 
6550
aaatcacaat cttagttaaa gcttttaggc ccaatagtgt cccaattatt 
6600
ttagcccatt atttaacaag gtacgacaga ttatcaacgt cactcgacca 
6650
atacaagtaa aggtaaaact atgggccgat aaaaaatgcc caatttcagt 
6700
ttttacagcc cagttgtaag ttcaccagta gtggatacac tgcgttagga 
6750
ctatccattt cagagaatgt attgataatt cggatatcta caaagtgacg 
6800
gaaaaaaaaa aaaaatcgga tatCTACAAA CTACAATTTG AATAGCTAGG 
6850
GATATTCACC ACCATCAGTT T
6900