fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G53200 (TRY)

Alias TRY
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CAPRICE
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description TRIPTYCHON, Homeodomain-like superfamily protein (.1)
TAIR annotation TRIPTYCHON (TRY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30420.1); Has 2274 Blast hits to 2274 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2256; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G53200.1 11
Entry clone (w/o stop) RE_02H12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10091: other cellular processes ->trichome branching
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6357: other metabolic processes ->regulation of transcription from RNA polymerase II promoter
(P) 7275: developmental processes ->multicellular organism development
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 1 4
soybean 1 1
rice
sorghum
physcomitrella
Total 2 2 1 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         glabra (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         glabra 
         (A20348-148)
         

         
         

         glabra 
         (A20860-38)
         

         sterile or low fertility, 
         short stamen, 
         pollen defective 
         (A20861-62)
         

         glabra 
         (A20348-138)
         

         
         

         glabra 
         (A20347-85)
         

         
         

         glabra 
         (A20347-59)
         

         
         

         hyponastic leaf 
         (A20860-42)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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