fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G01060 (LHY, LHY1)

Alias LHY, LHY1
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / LHY
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
TAIR annotation LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 (.1), LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 (.2), LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 (.3), LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 (.4), LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 (.5)
Gene model
Gene model cDNA support
AT1G01060.1 65
AT1G01060.4 64
AT1G01060.2 64
AT1G01060.5 49
AT1G01060.3 33
Entry clone (w/o stop) RE_1322
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42752: other biological processes ->regulation of circadian rhythm
(P) 42754: other biological processes ->negative regulation of circadian rhythm
(P) 43433: other metabolic processes ->negative regulation of sequence-specific DNA binding transcription factor activity
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 46686: other biological processes ->response to cadmium ion
(P) 48574: developmental processes ->long-day photoperiodism, flowering
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(P) 9409: response to stress ->response to cold
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
LNQAFLDLEKMPFSEKT at 139/645 in AT1G01060.1
LNQAFLDLEKMPFSEKT at 139/645 in AT1G01060.2
LNQAFLDLEKMPFSEKT at 139/645 in AT1G01060.3
LNQAFLDLEKMPFSEKT at 139/644 in AT1G01060.4
LNQAFLDLEKMPFSEKT at 137/643 in AT1G01060.5
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
abnormal flowering or growth (08025), long hypocotyl (08025), slow growth (08025), non-rosette growth (08025), abnormal stem (08025), long petiole (08025)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project late flowering, aerial rosette (A20367-195)

long hypocotyl (A106933-8)
late flowering, too large leaf (A20960-17)
pale green leaf, long hypocotyl (A50118-1003)
Phenotype in ornamental plants
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