Alias |
bHLH074, CIB4 |
TF Classification |
FioreDB | bHLH (Click to show phylogenetic tree) |
RARTF | bHLH / TRANSPARENT TESTA8 |
AtTFDB | bHLH |
PlnTFDB | bHLH (v3.0), bHLH (v1.0) |
DATF | bHLH |
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TAIR short description |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
TAIR annotation |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.2); Has 2297 Blast hits to 2289 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 55; Fungi - 29; Plants - 2202; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
RE_0198_x |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 40008: other biological processes |
->regulation of growth |
(F) 46983: protein binding |
->protein dimerization activity |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(P) 9637: response to abiotic or biotic stimulus |
->response to blue light |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miR396b: 3'-TTCAAGTTCTTTCGACACCTT-5' |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
1 |
|
|
1 |
soybean |
|
1 |
|
|
1 |
rice |
|
|
|
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sorghum |
|
|
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physcomitrella |
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|
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Total |
|
2 |
|
|
2 |
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Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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