fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G22070 (TGA3)

Alias TGA3
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFTGA3
AtTFDBbZIP
PlnTFDBbZIP (v1.0)
DATFbZIP
TAIR short description TGA1A-related gene 3 (.1)
TAIR annotation Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. (.1)
Gene model
Gene model cDNA support
AT1G22070.1 36
Entry clone (w/o stop) RE_0309_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to stress ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9626: response to stress ->plant-type hypersensitive response
(P) 9862: response to stress ->systemic acquired resistance, salicylic acid mediated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR8170: 3'-TGTATCTTTTAGAAATTCGTT-5'
5'--3'

miRN118: 3'-CGGTTAAAGTAGTGTCGAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 12 13
soybean 4 31 35
rice 1 8 9
sorghum 1 5 6
physcomitrella 1 6 7
Total 8 62 70
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002327 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002327 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040102 (Type III)
QTTDQDLELKLLVEAG at 209/397 in rice Os019143 (Type II)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002326 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002326 (Type III)
QQAEDALSLGLEKLQQ at 230/326 in soybean Gm014775 (Type II)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040104 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002325 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002325 (Type III)
QQAEDALSLGLDKLQQ at 156/259 in soybean Gm034855 (Type II)
RIKLNQLELELQRARQ at 81/342 in physcomitrella Pp002328 (Type III)
SQGLEALQLSLSDTLS at 249/342 in physcomitrella Pp002328 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040103 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         rough surface leaf, 
         slow growth, 
         abnormal stem 
         (A20456-30)
         

         dwarf, 
         rough surface leaf, 
         short pedicel 
         (A20457-55)
         

         
         

         too large leaf, 
         slow growth, 
         abnormal shaped silique 
         (A20458-146)
         

         
         
         
         
         
         

         short pedicel, 
         sterile or low fertility 
         (A20456-51)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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