Alias |
RAP2.4 |
TF Classification |
|
TAIR short description |
related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) |
TAIR annotation |
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_01A04 |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(P) 6970: response to abiotic or biotic stimulus |
->response to osmotic stress |
(P) 9409: response to abiotic or biotic stimulus |
->response to cold |
(P) 9414: response to stress |
->response to water deprivation |
(P) 9873: signal transduction |
->ethylene-activated signaling pathway |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN145: 3'-TTTTCAATTCCTAGATTAAAA-5' |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
|
|
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soybean |
|
|
1 |
2 |
3 |
rice |
|
|
|
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sorghum |
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physcomitrella |
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|
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|
|
Total |
|
|
1 |
2 |
3 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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