fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G25250 (ATIDD16)

Alias ATIDD16
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description indeterminate(ID)-domain 16 (.1)
TAIR annotation indeterminate(ID)-domain 16 (IDD16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 32987 Blast hits to 15964 proteins in 303 species: Archae - 1; Bacteria - 31; Metazoa - 31048; Fungi - 164; Plants - 739; Viruses - 10; Other Eukaryotes - 994 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G25250.1 1
Entry clone (w/o stop) IE_0054
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10601: other metabolic processes ->positive regulation of auxin biosynthetic process
(P) 2000012: transport ->regulation of auxin polar transport
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48444: developmental processes ->floral organ morphogenesis
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 5 6
rice 1 1
sorghum 1 1 2
physcomitrella 1 1
Total 5 9 14
Repression motif 
SAPFESLELQLSIGMA at 233/362 in AT1G25250.1
Repression motif
in putative orthologs		 
AAHYQNLELQLSTTSR at 261/455 in poplar Pt026756 (Type III)
SQQEHNLELQLLPSSS at 250/422 in poplar Pt033952 (Type III)
AAHYHNLELQLSTASG at 261/456 in poplar Pt022676 (Type III)
KLLHPNLDLQLSTPTN at 285/506 in soybean Gm018077 (Type III)
KLLHPNLDLQLSTPTT at 251/439 in soybean Gm025128 (Type III)
RGGHHNLELQLMPPSC at 289/499 in sorghum Sb006007 (Type II)
GGVHHNLELQLMPPRG at 315/536 in sorghum Sb015948 (Type III)
NKVHPNLELQLSNTTP at 256/380 in soybean Gm020360 (Type III)
STTSHNLELQLLPSST at 265/438 in soybean Gm020732 (Type III)
SQQEHNLELQLLPSSS at 250/393 in poplar Pt042165 (Type II)
Status
Plasmid construction -> The work interrupted(05Jul)
Plasmid construction -> The work interrupted(05Jul)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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