fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT1G25440 (COL16)
Alias
COL16
TF Classification
FioreDB
CO
(Click to show phylogenetic tree)
RARTF
C2C2(Zn)
/ CO-like
AtTFDB
C2C2-CO-like
PlnTFDB
C2C2-CO-like
(v3.0), C2C2-CO-like (v1.0)
DATF
C2C2-CO-like
TAIR short description
B-box type zinc finger protein with CCT domain (.1)
TAIR annotation
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G68520.1); Has 3476 Blast hits to 2333 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3380; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT1G25440.1
152
Entry clone (w/o stop)
RE_1081_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(C) 16020: other membranes
->membrane
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
(F) 8270: other binding
->zinc ion binding
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR396b: 3'-TTCAAGTTCTTTCGACACCTT-5'
5'--3'
miR5998: 3'-TGTTTTGTTTTGTGTTTGACA-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
rice
1
1
sorghum
1
1
physcomitrella
1
1
Total
1
4
5
Repression motif
Repression motif
in putative orthologs
QLQQS
NLALSL
NYEAI at 324/481 in rice
Os024414
(Type Ib)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment